Command line: [exonerate -m p2g --showtargetgff --exhaustive yes -q proteina.fa -t GPx7_Human.1.subseq.fa]
Hostname: [ws101139]

C4 Alignment:
------------
         Query: GPx7_Human
        Target: KI537096.1:subseq(14501953,200344) Balaenoptera acutorostrata scammoni unplaced genomic scaffold scaffold10, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 719
   Query range: 19 -> 187
  Target range: 194201 -> 98463

     20 : GlnGlnGluGlnAspPhe{Ty}  >>>> Target Intron 1 >>>>  {r}AspP :     28
          :::|||   ...|||:::{ !}           9649 bp           { }:!!.
          GluGlnThrSerAspTyr{Gl}++                         ++{n}AsnI
 194201 : gaacaaaccagtgattac{ca}gt.........................ag{A}AACA : 184528

     29 : heLysAlaValAsnIleArgGlyLysLeuValSerLeuGluLysTyrArgGlySer   :     47
          !!!:!  !  !:!!  !!::||||||...::::::|||...|||   |||  !!.!  
          leArgLysLysAspCysGlnGlyLysPheIleAsnLeuAsnLysIleArgIleLys++
 184527 : TCAGGAAAAAAGACTGCCAaggaaaattcattaatttaaacaaaattaggaTTAAAgt : 184471

     48 : >>>> Target Intron 2 >>>>  ValSerLeuValValAsnValAlaSerGluC :     57
                   84127 bp          |||||||||||||||||||||||||||||||
                                   ++ValSerLeuValValAsnValAlaSerGluC
 184470 : .........................agGTGTCCCTGGTGGTGAACGTGGCTAGCGAGT : 100314

     58 : ysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuGlnArgAspLeuGlyPr :     76
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ysGlyPheThrAspGlnHisTyrArgAlaLeuGlnGlnLeuGlnArgAspLeuGlyPr
 100313 : GTGGCTTCACAGACCAGCACTACCGGGCCCTGCAACAGCTACAGCGGGACCTGGGGCC : 100257

     77 : oHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyGlnGlnGluProAsp :     95
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||:!!
          oHisHisPheAsnValLeuAlaPheProCysAsnGlnPheGlyGlnGlnGluProAsn
 100256 : TCACCACTTCAACGTGCTTGCCTTTCCCTGCAACCAGTTTGGCCAGCAGGAGCCCAAC : 100200

     96 : SerAsnLysGluIleGluSerPheAlaArgArgThrTyrSerValSerPheProMetP :    115
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          SerAsnLysGluIleGluSerPheAlaArgArgThrTyrSerValSerPheProMetP
 100199 : AGCAACAAGGAGATTGAGAGCTTTGCCCGCCGCACCTACAGTGTCTCTTTCCCCATGT : 100140

    116 : heSerLysIleAlaValThrGlyThrGlyAlaHisProAlaPheLysTyrLeuAla{G :    134
          |||||||||||.!!|||||||||||||||||||||||||||||||||||||||  !{|
          heSerLysIleThrValThrGlyThrGlyAlaHisProAlaPheLysTyrLeuIle{G
 100139 : TTAGCAAGATCACAGTCACCGGCACTGGTGCCCACCCTGCCTTCAAGTACCTGATC{C : 100083

    135 : }  >>>> Target Intron 3 >>>>  {ln}ThrSerGlyLysGluProThrTrp :    142
          }           1458 bp           {||}||||||||||||||||||||||||
          }++                         ++{ln}ThrSerGlyLysGluProThrTrp
 100082 : }gt.........................ag{AG}ACTTCTGGAAAGGAGCCCACCTGG :  98601

    143 : AsnPheTrpLysTyrLeuValAlaProAspGlyLysValValGlyAlaTrpAspProT :    162
          |||||||||||||||||||||||||||||||||||||||:!!! !|||||||||||||
          AsnPheTrpLysTyrLeuValAlaProAspGlyLysValIleGluAlaTrpAspProT
  98600 : AACTTCTGGAAGTACCTAGTGGCCCCAGATGGAAAGGTGATAGAGGCTTGGGACCCAA :  98541

    163 : hrValSerValGluGluValArgProGlnIleThrAlaLeuValArgLysLeuIleLe :    181
          |||||||||||||||||:!!||||||||||||||||||||||||||||||||||||||
          hrValSerValGluGluIleArgProGlnIleThrAlaLeuValArgLysLeuIleLe
  98540 : CCGTGTCGGTGGAGGAGATAAGGCCCCAGATTACAGCGCTTGTGAGGAAGCTCATCCT :  98484

    182 : uLeuLysArgGluAspLeu :    187
          |  !|||||||||||||||
          uLysLysArgGluAspLeu
  98483 : GAAGAAGCGAGAAGACTTA :  98464

vulgar: GPx7_Human 19 187 . KI537096.1:subseq(14501953,200344) 194201 98463 - 719 M 6 18 S 0 2 5 0 2 I 0 9645 3 0 2 S 1 1 M 20 60 5 0 2 I 0 84123 3 0 2 M 87 261 S 0 1 5 0 2 I 0 1454 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2014-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	gene	98464	194201	719	-	.	gene_id 1 ; sequence GPx7_Human ; gene_orientation +
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	cds	194182	194201	.	-	.	
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	exon	194182	194201	.	-	.	insertions 0 ; deletions 0
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	splice5	194180	194181	.	-	.	intron_id 1 ; splice_site "gt"
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	intron	184533	194181	.	-	.	intron_id 1
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	splice3	184533	184534	.	-	.	intron_id 0 ; splice_site "AG"
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	cds	184472	184532	.	-	.	
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	exon	184472	184532	.	-	.	insertions 0 ; deletions 0
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	splice5	184470	184471	.	-	.	intron_id 2 ; splice_site "GT"
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	intron	100345	184471	.	-	.	intron_id 2
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	splice3	100345	100346	.	-	.	intron_id 1 ; splice_site "AG"
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	cds	100083	100344	.	-	.	
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	exon	100083	100344	.	-	.	insertions 0 ; deletions 0
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	splice5	100081	100082	.	-	.	intron_id 3 ; splice_site "GT"
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	intron	98625	100082	.	-	.	intron_id 3
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	splice3	98625	98626	.	-	.	intron_id 2 ; splice_site "AG"
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	cds	98464	98624	.	-	.	
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	exon	98464	98624	.	-	.	insertions 0 ; deletions 0
KI537096.1:subseq(14501953,200344)	exonerate:protein2genome:local	similarity	98464	194201	719	-	.	alignment_id 1 ; Query GPx7_Human ; Align 194202 20 18 ; Align 184532 27 60 ; Align 100345 47 261 ; Align 98623 135 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
